docs: update README onboarding guide and fix script tests

fix: align all embedding dimensions to 384 for Gemma 3 300M consistency

feat: add local datetime support and automated updated_at trigger for items table

feat: add rust support to nesting/line scripts and fix app.exe startup dll path

refactor: modernize source code with improved structure and logging ...

- Add config.js for centralized configuration management
- Add logger.js for structured logging with levels
- Modernize main.js with JSDoc comments and error handling
- Enhance mcp-server.js with health check endpoint and logging
- Refactor db.js with validation and error handling functions
- Add TOOL_NAMES constant and improve mcp-tools.js documentation
- Refactor mcp-handlers.js with modular handler functions
- Enhance llama-client.js with timeout and input validation
- Update test to match new error messages
- All 35 tests passing with improved code quality

Add comprehensive test suite (35 tests) and update journal ...

- Create test/ folder with 5 test modules (35 tests total)
  * db.test.js: Database operations (5 tests)
  * mcp-tools.test.js: Tool definitions (11 tests)
  * mcp-handlers.test.js: Handler implementation (6 tests)
  * llama-client.test.js: LLama API integration (9 tests)
  * integration.test.js: End-to-end workflows (4 tests)
- Add test/setup.js: Shared test utilities
- Add test/README.md: Test documentation
- Update package.json: Add test scripts (7 variants)
- Update journals/20260206-0000-案件.md: Document test implementation
- All 35 tests passing (139 expect calls)